Command Reference

SciWIn client provides commands for project initialization (s4n init), working with CWL CommandLineTools (s4n tool) and CWL Workflows (s4n workflow), metadata annotation (s4n annotate), the execution of CWL (s4n execute) and synchronization with a remote sever (s4n sync).

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/  ___|      (_)| |  | ||_   _|       /  __ \| |(_)             | |
\ `--.   ___  _ | |  | |  | |  _ __   | /  \/| | _   ___  _ __  | |_
 `--. \ / __|| || |/\| |  | | | '_ \  | |    | || | / _ \| '_ \ | __|
/\__/ /| (__ | |\  /\  / _| |_| | | | | \__/\| || ||  __/| | | || |_
\____/  \___||_| \/  \/  \___/|_| |_|  \____/|_||_| \___||_| |_| \__|

Client tool for Scientific Workflow Infrastructure (SciWIn)
Documentation: https://fairagro.github.io/m4.4_sciwin_client/

Version: 0.5.2

Usage: s4n <COMMAND>

Commands:
  init         Initializes project folder structure and repository
  tool         Provides commands to create and work with CWL CommandLineTools
  workflow     Provides commands to create and work with CWL Workflows
  annotate     Annotate CWL files
  execute      Execution of CWL Files locally or on remote servers [aliases: ex]
  sync
  completions  Generate shell completions
  help         Print this message or the help of the given subcommand(s)

Options:
  -h, --help     Print help
  -V, --version  Print version

Shell completions

Shell completions are available using the s4n completions command

Generate shell completions

Usage: s4n completions <SHELL>

Arguments:
  <SHELL>  [possible values: bash, elvish, fish, powershell, zsh]

Options:
  -h, --help  Print help

The command can be used to generate the shell completions for several shells.

s4n completions bash > completions.sh