Command Reference

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Client tool for Scientific Workflow Infrastructure (SciWIn)
Documentation: https://fairagro.github.io/m4.4_sciwin_client/

Version: 1.0.0

Usage: s4n <COMMAND>

Commands:
init         Initializes project folder structure and repository
create       Creates a new CWL File or Workflow
list         Lists either all CWL Files or details to a given file [aliases: ls]
remove       Removes a CWL File from the workflows Directory [aliases: rm]
connect      Connects a workflow node
disconnect   Disconnects a workflow node
visualize    Visualizes a workflow
save         Saves a workflow
install      Installs a workflow as submodule [aliases: i]
uninstall    Removes an installed workflow
execute      Execution of CWL Files locally or on remote servers [aliases: ex]
annotate     Annotate CWL files
completions  Generate shell completions
help         Print this message or the help of the given subcommand(s)

Options:
-h, --help     Print help
-V, --version  Print version

The 1.0.0 Release changed a lot of commands. Please check the Command Reference for updated commands. The old commands map as follows:

Old Command	New Command
s4n tool create	s4n create
s4n tool list	s4n list
s4n tool remove	s4n remove
s4n workflow create	s4n create —name
s4n workflow list	s4n list
s4n workflow remove	s4n remove
s4n workflow status	s4n list [WORKFLOW_NAME]
s4n workflow connect	s4n connect
s4n workflow disconnect	s4n disconnect
s4n workflow visualize	s4n visualize
s4n workflow save	s4n save

Shell completions

Shell completions are available using the s4n completions command

Generate shell completions

Usage: s4n completions <SHELL>

Arguments:
  <SHELL>  [possible values: bash, elvish, fish, powershell, zsh]

Options:
  -h, --help  Print help

The command can be used to generate the shell completions for several shells.

s4n completions bash > completions.sh