biocontainers/samtools
- Registry
- docker.io
- Digest
- da61624fda230e94867c9429ca1112e1e77c24e500b52dfc84eaf2f5820b4a2a
- Architecture
- –
- OS
- –
- Size
- 634.7 MB
- Entrypoint
- –
- Packages
- 335
| Ecosystem | Name | Version |
|---|---|---|
| deb | adduser | 3.118 |
| deb | apt | 1.8.2 |
| deb | base-files | 10.3 |
| deb | base-passwd | 3.5.46 |
| deb | bash | 5.0-4 |
| deb | binutils | 2.31.1-16 |
| deb | binutils-common | 2.31.1-16 |
| deb | binutils-x86-64-linux-gnu | 2.31.1-16 |
| deb | bsdutils | 1:2.33.1-0.1 |
| deb | bzip2 | 1.0.6-9.2~deb10u1 |
| deb | ca-certificates | 20190110 |
| deb | coreutils | 8.30-3 |
| deb | cpp | 4:8.3.0-1 |
| deb | cpp-8 | 8.3.0-6 |
| deb | cwltool | 1.0.20181217162649+dfsg-10 |
| deb | dash | 0.5.10.2-5 |
| deb | debconf | 1.5.71 |
| deb | debian-archive-keyring | 2019.1 |
| deb | debianutils | 4.8.6.1 |
| deb | diffutils | 1:3.7-3 |
| deb | dpkg | 1.19.7 |
| deb | e2fsprogs | 1.44.5-1 |
| deb | fdisk | 2.33.1-0.1 |
| deb | file | 1:5.35-4 |
| deb | findutils | 4.6.0+git+20190209-2 |
| deb | fontconfig-config | 2.13.1-2 |
| deb | fonts-dejavu-core | 2.37-1 |
| deb | fonts-glyphicons-halflings | 1.009~3.4.1+dfsg-1 |
| deb | g++ | 4:8.3.0-1 |
| deb | g++-8 | 8.3.0-6 |
| deb | gcc | 4:8.3.0-1 |
| deb | gcc-8 | 8.3.0-6 |
| deb | gcc-8-base | 8.3.0-6 |
| deb | gdal-data | 2.4.0+dfsg-1 |
| deb | gpgv | 2.2.12-1 |
| deb | grep | 3.3-1 |
| deb | gzip | 1.9-3 |
| deb | hostname | 3.21 |
| deb | init-system-helpers | 1.56+nmu1 |
| deb | iproute2 | 4.20.0-2 |
| deb | iputils-ping | 3:20180629-2 |
| deb | krb5-locales | 1.17-3 |
| deb | libacl1 | 2.2.53-4 |
| deb | libaec0 | 1.0.2-1 |
| deb | libapt-pkg5.0 | 1.8.2 |
| deb | libarmadillo9 | 1:9.200.7+dfsg-1 |
| deb | libarpack2 | 3.7.0-2 |
| deb | libasan5 | 8.3.0-6 |
| deb | libatomic1 | 8.3.0-6 |
| deb | libattr1 | 1:2.4.48-4 |
| deb | libaudit-common | 1:2.8.4-3 |
| deb | libaudit1 | 1:2.8.4-3 |
| deb | libbinutils | 2.31.1-16 |
| deb | libblas3 | 3.8.0-2 |
| deb | libblkid1 | 2.33.1-0.1 |
| deb | libbz2-1.0 | 1.0.6-9.2~deb10u1 |
| deb | libc-ares2 | 1.14.0-1 |
| deb | libc-bin | 2.28-10 |
| deb | libc-dev-bin | 2.28-10 |
| deb | libc6 | 2.28-10 |
| deb | libc6-dev | 2.28-10 |
| deb | libcap-ng0 | 0.7.9-2 |
| deb | libcap2 | 1:2.25-2 |
| deb | libcap2-bin | 1:2.25-2 |
| deb | libcc1-0 | 8.3.0-6 |
| deb | libcharls2 | 2.0.0+dfsg-1 |
| deb | libcom-err2 | 1.44.5-1 |
| deb | libcurl3-gnutls | 7.64.0-4 |
| deb | libdap25 | 3.20.3-1 |
| deb | libdapclient6v5 | 3.20.3-1 |
| deb | libdapserver7v5 | 3.20.3-1 |
| deb | libdb5.3 | 5.3.28+dfsg1-0.5 |
| deb | libdebconfclient0 | 0.249 |
| deb | libdeflate0 | 1.2-1 |
| deb | libelf1 | 0.176-1.1 |
| deb | libepsilon1 | 0.9.2+dfsg-4 |
| deb | libexpat1 | 2.2.6-2+deb10u1 |
| deb | libext2fs2 | 1.44.5-1 |
| deb | libfdisk1 | 2.33.1-0.1 |
| deb | libffi6 | 3.2.1-9 |
| deb | libfontconfig1 | 2.13.1-2 |
| deb | libfreetype6 | 2.9.1-3 |
| deb | libfreexl1 | 1.0.5-3 |
| deb | libfyba0 | 4.1.1-6 |
| deb | libgcc-8-dev | 8.3.0-6 |
| deb | libgcc1 | 1:8.3.0-6 |
| deb | libgcrypt20 | 1.8.4-5 |
| deb | libgdal20 | 2.4.0+dfsg-1+b1 |
| deb | libgeos-3.7.1 | 3.7.1-1 |
| deb | libgeos-c1v5 | 3.7.1-1 |
| deb | libgeotiff2 | 1.4.3-1 |
| deb | libgfortran5 | 8.3.0-6 |
| deb | libgif7 | 5.1.4-3 |
| deb | libgmp10 | 2:6.1.2+dfsg-4 |
| deb | libgnutls30 | 3.6.7-4 |
| deb | libgomp1 | 8.3.0-6 |
| deb | libgpg-error0 | 1.35-1 |
| deb | libgpm2 | 1.20.7-5 |
| deb | libgssapi-krb5-2 | 1.17-3 |
| deb | libhdf4-0-alt | 4.2.13-4 |
| deb | libhdf5-103 | 1.10.4+repack-10 |
| deb | libhogweed4 | 3.4.1-1 |
| deb | libhts2 | 1.9-11 |
| deb | libicu63 | 63.1-6 |
| deb | libidn2-0 | 2.0.5-1 |
| deb | libimagequant0 | 2.12.2-1.1 |
| deb | libisl19 | 0.20-2 |
| deb | libitm1 | 8.3.0-6 |
| deb | libjbig0 | 2.1-3.1+b2 |
| deb | libjpeg62-turbo | 1:1.5.2-2+b1 |
| deb | libjs-bootstrap | 3.4.1+dfsg-1 |
| deb | libjson-c3 | 0.12.1+ds-2 |
| deb | libk5crypto3 | 1.17-3 |
| deb | libkeyutils1 | 1.6-6 |
| deb | libkmlbase1 | 1.3.0-7 |
| deb | libkmlconvenience1 | 1.3.0-7 |
| deb | libkmldom1 | 1.3.0-7 |
| deb | libkmlengine1 | 1.3.0-7 |
| deb | libkmlregionator1 | 1.3.0-7 |
| deb | libkmlxsd1 | 1.3.0-7 |
| deb | libkrb5-3 | 1.17-3 |
| deb | libkrb5support0 | 1.17-3 |
| deb | liblapack3 | 3.8.0-2 |
| deb | liblcms2-2 | 2.9-3 |
| deb | libldap-2.4-2 | 2.4.48+dfsg-1~bpo10+1 |
| deb | libldap-common | 2.4.48+dfsg-1~bpo10+1 |
| deb | liblsan0 | 8.3.0-6 |
| deb | libltdl7 | 2.4.6-9 |
| deb | liblz4-1 | 1.8.3-1 |
| deb | liblzma5 | 5.2.4-1 |
| deb | libmagic-mgc | 1:5.35-4 |
| deb | libmagic1 | 1:5.35-4 |
| deb | libmariadb3 | 1:10.3.17-0+deb10u1 |
| deb | libminizip1 | 1.1-8+b1 |
| deb | libmnl0 | 1.0.4-2 |
| deb | libmount1 | 2.33.1-0.1 |
| deb | libmpc3 | 1.1.0-1 |
| deb | libmpdec2 | 2.4.2-2 |
| deb | libmpfr6 | 4.0.2-1 |
| deb | libmpx2 | 8.3.0-6 |
| deb | libncurses6 | 6.1+20181013-2+deb10u1 |
| deb | libncursesw6 | 6.1+20181013-2+deb10u1 |
| deb | libnetcdf13 | 1:4.6.2-1 |
| deb | libnettle6 | 3.4.1-1 |
| deb | libnghttp2-14 | 1.36.0-2+deb10u1 |
| deb | libnode64 | 10.15.2~dfsg-2 |
| deb | libnspr4 | 2:4.20-1 |
| deb | libnss3 | 2:3.42.1-1+deb10u1 |
| deb | libodbc1 | 2.3.6-0.1 |
| deb | libogdi3.2 | 3.2.1+ds-4 |
| deb | libopenjp2-7 | 2.3.0-2 |
| deb | libp11-kit0 | 0.23.15-2 |
| deb | libpam-modules | 1.3.1-5 |
| deb | libpam-modules-bin | 1.3.1-5 |
| deb | libpam-runtime | 1.3.1-5 |
| deb | libpam0g | 1.3.1-5 |
| deb | libpcre3 | 2:8.39-12 |
| deb | libpng16-16 | 1.6.36-6 |
| deb | libpoppler82 | 0.71.0-5 |
| deb | libpopt0 | 1.16-12 |
| deb | libpq5 | 11.5-1+deb10u1 |
| deb | libproj13 | 5.2.0-1 |
| deb | libpsl5 | 0.20.2-2 |
| deb | libpython-stdlib | 2.7.16-1 |
| deb | libpython2-stdlib | 2.7.16-1 |
| deb | libpython2.7-minimal | 2.7.16-2 |
| deb | libpython2.7-stdlib | 2.7.16-2 |
| deb | libpython3-stdlib | 3.7.3-1 |
| deb | libpython3.7-minimal | 3.7.3-2 |
| deb | libpython3.7-stdlib | 3.7.3-2 |
| deb | libqhull7 | 2015.2-4 |
| deb | libquadmath0 | 8.3.0-6 |
| deb | libreadline7 | 7.0-5 |
| deb | librtmp1 | 2.4+20151223.gitfa8646d.1-2 |
| deb | libsasl2-2 | 2.1.27+dfsg-1 |
| deb | libsasl2-modules | 2.1.27+dfsg-1 |
| deb | libsasl2-modules-db | 2.1.27+dfsg-1 |
| deb | libseccomp2 | 2.3.3-4 |
| deb | libselinux1 | 2.8-1+b1 |
| deb | libsemanage-common | 2.8-2 |
| deb | libsemanage1 | 2.8-2 |
| deb | libsepol1 | 2.8-1 |
| deb | libsmartcols1 | 2.33.1-0.1 |
| deb | libspatialite7 | 4.3.0a-5+b2 |
| deb | libsqlite3-0 | 3.27.2-3 |
| deb | libss2 | 1.44.5-1 |
| deb | libssh2-1 | 1.8.0-2.1 |
| deb | libssl1.1 | 1.1.1d-0+deb10u2 |
| deb | libstdc++-8-dev | 8.3.0-6 |
| deb | libstdc++6 | 8.3.0-6 |
| deb | libsuperlu5 | 5.2.1+dfsg1-4 |
| deb | libsystemd0 | 241-5 |
| deb | libsz2 | 1.0.2-1 |
| deb | libtasn1-6 | 4.13-3 |
| deb | libtiff5 | 4.0.10-4 |
| deb | libtinfo6 | 6.1+20181013-2+deb10u1 |
| deb | libtsan0 | 8.3.0-6 |
| deb | libubsan1 | 8.3.0-6 |
| deb | libudev1 | 241-5 |
| deb | libunistring2 | 0.9.10-1 |
| deb | liburiparser1 | 0.9.1-1 |
| deb | libuuid1 | 2.33.1-0.1 |
| deb | libuv1 | 1.24.1-1 |
| deb | libwebp6 | 0.6.1-2 |
| deb | libwebpdemux2 | 0.6.1-2 |
| deb | libwebpmux3 | 0.6.1-2 |
| deb | libxerces-c3.2 | 3.2.2+debian-1+b1 |
| deb | libxml2 | 2.9.4+dfsg1-7+b3 |
| deb | libxslt1.1 | 1.1.32-2.1~deb10u1 |
| deb | libxtables12 | 1.8.2-4 |
| deb | libyaml-0-2 | 0.2.1-1 |
| deb | libzstd1 | 1.3.8+dfsg-3 |
| deb | linux-libc-dev | 5.2.17-1~bpo10+1 |
| deb | login | 1:4.5-1.1 |
| deb | manpages | 5.02-1~bpo10+1 |
| deb | manpages-dev | 5.02-1~bpo10+1 |
| deb | mariadb-common | 1:10.3.17-0+deb10u1 |
| deb | mawk | 1.3.3-17+b3 |
| deb | mime-support | 3.62 |
| deb | mount | 2.33.1-0.1 |
| deb | mysql-common | 5.8+1.0.5 |
| deb | ncurses-base | 6.1+20181013-2 |
| deb | ncurses-bin | 6.1+20181013-2 |
| deb | nodejs | 10.15.2~dfsg-2 |
| deb | nodejs-doc | 10.15.2~dfsg-2 |
| deb | odbcinst | 2.3.6-0.1 |
| deb | odbcinst1debian2 | 2.3.6-0.1 |
| deb | openssl | 1.1.1d-0+deb10u2 |
| deb | passwd | 1:4.5-1.1 |
| deb | perl-base | 5.28.1-6 |
| deb | poppler-data | 0.4.9-2 |
| deb | proj-bin | 5.2.0-1 |
| deb | proj-data | 5.2.0-1 |
| deb | publicsuffix | 20190415.1030-1 |
| deb | python | 2.7.16-1 |
| deb | python-minimal | 2.7.16-1 |
| deb | python2 | 2.7.16-1 |
| deb | python2-minimal | 2.7.16-1 |
| deb | python2.7 | 2.7.16-2 |
| deb | python2.7-minimal | 2.7.16-2 |
| deb | python3 | 3.7.3-1 |
| deb | python3-bs4 | 4.7.1-1 |
| deb | python3-cachecontrol | 0.11.7-1 |
| deb | python3-certifi | 2018.8.24-1 |
| deb | python3-chardet | 3.0.4-3 |
| deb | python3-dateutil | 2.7.3-3 |
| deb | python3-decorator | 4.3.0-1.1 |
| deb | python3-distutils | 3.7.3-1 |
| deb | python3-gdal | 2.4.0+dfsg-1+b1 |
| deb | python3-html5lib | 1.0.1-1 |
| deb | python3-idna | 2.6-1 |
| deb | python3-isodate | 0.6.0-1 |
| deb | python3-lib2to3 | 3.7.3-1 |
| deb | python3-lockfile | 1:0.12.2-2 |
| deb | python3-lxml | 4.3.2-1 |
| deb | python3-minimal | 3.7.3-1 |
| deb | python3-mistune | 0.8.4-1 |
| deb | python3-mypy | 0.670-2 |
| deb | python3-mypy-extensions | 0.4.1-1 |
| deb | python3-networkx | 2.2-1 |
| deb | python3-numpy | 1:1.16.2-1 |
| deb | python3-olefile | 0.46-1 |
| deb | python3-pil | 5.4.1-2 |
| deb | python3-pkg-resources | 40.8.0-1 |
| deb | python3-prov | 1.5.2-1 |
| deb | python3-psutil | 5.5.1-1 |
| deb | python3-pyparsing | 2.2.0+dfsg1-2 |
| deb | python3-rdflib | 4.2.2-2 |
| deb | python3-rdflib-jsonld | 0.4.0-4 |
| deb | python3-requests | 2.21.0-1 |
| deb | python3-ruamel.yaml | 0.15.34-1+b1 |
| deb | python3-schema-salad | 3.0.20181206233650-2 |
| deb | python3-scipy | 1.1.0-7 |
| deb | python3-shellescape | 3.4.1-3 |
| deb | python3-six | 1.12.0-1 |
| deb | python3-soupsieve | 1.8+dfsg-1 |
| deb | python3-sparqlwrapper | 1.8.2-0.1 |
| deb | python3-typed-ast | 1.3.1-1 |
| deb | python3-typing-extensions | 3.7.2-1 |
| deb | python3-urllib3 | 1.24.1-1 |
| deb | python3-webencodings | 0.5.1-1 |
| deb | python3-yaml | 3.13-2 |
| deb | python3.7 | 3.7.3-2 |
| deb | python3.7-minimal | 3.7.3-2 |
| deb | readline-common | 7.0-5 |
| deb | samtools | 1.9-4 |
| deb | sed | 4.7-1 |
| deb | sensible-utils | 0.0.12 |
| deb | sysvinit-utils | 2.93-8 |
| deb | tar | 1.30+dfsg-6 |
| deb | tzdata | 2019a-1 |
| deb | ucf | 3.0038+nmu1 |
| deb | util-linux | 2.33.1-0.1 |
| deb | xz-utils | 5.2.4-1 |
| deb | zlib1g | 1:1.2.11.dfsg-1 |
| python | argparse | 1.2.1 |
| python | beautifulsoup4 | 4.7.1 |
| python | cachecontrol | 0.11.7 |
| python | certifi | 2018.8.24 |
| python | chardet | 3.0.4 |
| python | cwltool | 1.0.20181217162649 |
| python | decorator | 4.3.0 |
| python | gdal | 2.4.0 |
| python | html5lib | 1.0.1 |
| python | idna | 2.6 |
| python | isodate | 0.6.0 |
| python | lockfile | 0.12.2 |
| python | lxml | 4.3.2 |
| python | mistune | 0.8.4 |
| python | mypy | 0.670 |
| python | mypy-extensions | 0.4.1 |
| python | networkx | 2.2 |
| python | numpy | 1.16.2 |
| python | olefile | 0.46 |
| python | pillow | 5.4.1 |
| python | prov | 1.5.2 |
| python | psutil | 5.5.1 |
| python | pyparsing | 2.2.0 |
| python | python-dateutil | 2.7.3 |
| python | pyyaml | 3.13 |
| python | rdflib | 4.2.2 |
| python | rdflib-jsonld | 0.4.0 |
| python | requests | 2.21.0 |
| python | ruamel-yaml | 0.15.34 |
| python | schema-salad | 3.0.20181206233650 |
| python | scipy | 1.1.0 |
| python | shellescape | 3.4.1 |
| python | six | 1.12.0 |
| python | soupsieve | 1.8 |
| python | sparqlwrapper | 1.8.2 |
| python | typed-ast | 1.3.1 |
| python | typing-extensions | 3.7.2 |
| python | urllib3 | 1.24.1 |
| python | webencodings | 0.5.1 |
| python | wsgiref | 0.1.2 |